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(37)
Club Bioinfo
(27)
PSMN
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git
(3)
guide
(5)
nextflow
(2)
nf-core
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Title
Author
tutorial docker charliecloud
guide
How to build a docker image then charliecloud
Feb 15, 2024
Audrey Lapendry
Hub Presentation
git
skills overview
Dec 1, 2023
Laurent Modolo
Introduction to {tidymodels} R package
guide
See this presentation from this tutorial
1
by Julie Aubert and Antoine Bichat.
Jul 4, 2023
Ghislain Durif
Introduction to ensemble learning
guide
(sources)
Jun 20, 2023
Ghislain Durif
gitbio authentication
git
How to validate your new SSO ENS de Lyon authentication
Jun 2, 2023
Stephane Janczarski
R helper packages to develop R packages
guide
(sources)
Feb 28, 2023
Ghislain Durif
gitbio migration
git
How to update your ssh configuration
Feb 28, 2023
Laurent Modolo
nf-core
PSMN
nextflow
nf-core
How to run an nf-core pipeline on the PSMN
Feb 28, 2023
Laurent Modolo
PSMN migration
PSMN
nextflow
What to do with nextflow and the new PSMN configuration
Dec 15, 2022
Laurent Modolo
Quarto: markdown-based document creation/edition
guide
Static website generator and more
Nov 23, 2022
Ghislain Durif
Inference and simulation of gene regulatory networks
Club Bioinfo
The rise of single-cell data highlights the need for a nondeterministic view of gene expression, while offering new opportunities regarding gene regulatory network…
Jul 7, 2022
Élias Ventre
JOBIM2022 feedback
Club Bioinfo
presentation.pdf
Jul 7, 2022
Audrey Gilbert, Audrey Lapendry, Xavier Grand
git borg linker-core
Club Bioinfo
Incremental backup of your results folder with git and borg
Jun 30, 2022
Nicolas Fontrodona
Public Databases
Club Bioinfo
My experience on using public databases (4DN, ENCODE & GEO)
May 5, 2022
Auredy Lapendry
nf-core
Club Bioinfo
A community effort to collect a curated set of analysis pipelines
Feb 3, 2022
Nicolas Fontrodona
Combining R and FIJI to detect and characterize cells on tissue slices
Club Bioinfo
automated detection of cell in slices using R and FIJI
Jan 6, 2022
David Cluet
SonarQube
Club Bioinfo
Check the quality of your code with SonarQube
May 15, 2021
Nicolas Fontrodona
Calibrated Chip-Seq
Club Bioinfo
Nextflow pipeline to process calibrated chip-seq data
Apr 19, 2021
Laurent Modolo
The Sphinx and Roxygen2 documentation generators
Club Bioinfo
A documentation generator is a tool that creates software documentation intended for programmers (API documentation), end-users (end-user guide) or both
Mar 6, 2021
Nicolas Fontrodona
Nextflow DSL2
Club Bioinfo
changes introduced by the DSL2 of Nextflow
Feb 4, 2021
Laurent Modolo
Unit testing with R or Python
Club Bioinfo
Example of unit testing library
Nov 5, 2020
Laurent Modolo
Packaging with Python
Club Bioinfo
How to create and share your python package
Sep 3, 2020
Laurent Modolo
ChIA-PET
Club Bioinfo
Identifier les interactions de la chromatine grâce à la technologie ChIA-PET
Aug 10, 2020
Audrey Lapendry
RNA Direct
Club Bioinfo
link to pdf
Feb 3, 2020
Emmanuel Labaronne
Utiliser les ressources de l’IFB
Club Bioinfo
presentation.pdf
Dec 5, 2019
Carine Rey
GEO Deposit
Club Bioinfo
How to upload your data on GEO
Nov 9, 2019
Jean-Baptiste Claude
ACP
Club Bioinfo
DESeq2 usage with R
Oct 3, 2019
Hélène Polvech
Random Forest
Club Bioinfo
Simple description and applications
Dec 5, 2018
Nicolas Fontrodona
Reproducible science with Docker and VirtualBox
Club Bioinfo
How to use Docker and VirtualBox
Jul 14, 2018
Laurent Modolo
ssh & other tools to work remotly
Club Bioinfo
How to work remotly
Jun 14, 2018
Laurent Modolo
HBV Transcriptomics
Club Bioinfo
Nanopore long-reads analysis
Jun 14, 2018
Xavier Grand
DESeq2 Model
Club Bioinfo
presentation of the DESeq2 model
May 14, 2018
Laurent Modolo
DESeq2 R
Club Bioinfo
DESeq2 usage with R
May 14, 2018
Hélène Polvech
GLM
Club Bioinfo
Generalized Linear Model with R
Oct 17, 2017
Claire Burny, Nicolas Fontrodona
Multiple testing
Club Bioinfo
Multiple testing correction
Apr 20, 2017
Laurent Modolo
Simple tests
Club Bioinfo
Statical tests
Mar 15, 2017
Anissa Guillemin
Linear regression
Club Bioinfo
Linear regression with R
Feb 28, 2017
Claire Burny
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