RTqPCR raw data processing

Revamp R code doing RTqPCR raw data processing
ongoing
software development
R
SBDM Team
Authors

Ghislain Durif

Olivier Gandrillon

Elodie Vallin

Published

July 1, 2022

Progress

  • Summer 2022: bugs in the original script with newer version of R (>4.0.0) have been fixed
  • Fall 2022 and Spring 2023: development of the packages implementing the data processing pipeline

Partner

Systems Biology of Decision Making (SBDM) team

Context

The SBDM team use a tool to process raw data from RT-qPCR experiment and prepare them for downstream analysis. This tool is written in R as a long script. It was designed a long time ago and has been modified multiple times.

Objective

Revamp this script into a modern R package with modular functionalities to make more efficient, easier to use and to maintain.